Installing GD module for perl - Errors when installing program -


i trying install circos in ubuntu.

per instructions, have gone bin folder , run perl circos

i got error telling me bunch of modules not installed. tried install them, , worked except two.

when go cpan shell:

cpan[7]> install gd.pm running install module 'gd'   lds/gd-2.56.tar.gz   has been unwrapped directory /home/qiime/.cpan/build/gd-2.56-dqduwt   lds/gd-2.56.tar.gz   '/usr/bin/perl build.pl --installdirs site' returned status 512, not re-running

if run main terminal:

qiime@qiime-190-virtual-box:~/documents/circos-0.69/bin$ perl -mcpan -e 'install gd' reading '/home/qiime/.cpan/metadata'   database generated on wed, 27 jan 2016 07:41:02 gmt running install module 'gd' checksum /home/qiime/.cpan/sources/authors/id/l/ld/lds/gd-2.56.tar.gz ok  ==> couldn't mkdir '/home/qiime/.cpan/build/tmp-8161': permission denied  ==> cannot continue: please find reason why cannot make <== ==> directory                                                     <== ==> /home/qiime/.cpan/build/tmp-8161                              <== ==> , fix problem, retry.                              <==

every other (~15 modules total) module installed no problem. i'm not sure @ point. assume it's simple missing...?

for completeness, here error trying run perl circos:

qiime@qiime-190-virtual-box:~/documents/circos-0.69/bin$ perl circos *** required module(s) missing or out-of-date ***  missing 1 or more perl modules, require newer versions, or modules failed load. use cpan install described in tutorial  http://www.circos.ca/documentation/tutorials/configuration/perl_and_modules  missing gd   error can't locate gd.pm in @inc (@inc contains: /home/qiime/documents/circos-0.69/bin/lib /home/qiime/documents/circos-0.69/bin/../lib /home/qiime/documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) @ (eval 25) line 1. missing gd::polyline   error can't locate gd/polyline.pm in @inc (@inc contains: /home/qiime/documents/circos-0.69/bin/lib /home/qiime/documents/circos-0.69/bin/../lib /home/qiime/documents/circos-0.69/bin /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) @ (eval 26) line 1.

edit: update found may not have install libgd, did that. tried running install gd.pm in cpan shell:

cpan[1]> install gd.pm reading '/home/qiime/.cpan/metadata'   database generated on wed, 27 jan 2016 07:41:02 gmt running install module 'gd' checksum /home/qiime/.cpan/sources/authors/id/l/ld/lds/gd-2.56.tar.gz ok scanning cache /home/qiime/.cpan/build sizes ............................................................................done configuring l/ld/lds/gd-2.56.tar.gz build.pl configuring libgd version 2.0.36. checking stray libgd header files...none found.  unknown option: installdirs usage: perl build.pl [options]  configure gd module.   options:      -options       "jpeg,ft,png,gif,xpm,animgif"   feature options, separated commas      -lib_gd_path   path            path libgd      -lib_ft_path   path            path freetype library      -lib_png_path  path            path libpng      -lib_jpeg_path path            path libjpeg      -lib_xpm_path  path            path libxpm      -lib_zlib_path path            path libpng      -ignore_missing_gd             ignore missing or old libgd installations , try compile anyway  if no options passed on command line.  program attempt autoconfigure gdlib-config program (present in gd versions 2.0.27 or later).  otherwise prompt these values interactively. warning: no success on command[/usr/bin/perl build.pl --installdirs site]   lds/gd-2.56.tar.gz   /usr/bin/perl build.pl --installdirs site -- not ok failed during command:  lds/gd-2.56.tar.gz                           : writemakefile no '/usr/bin/perl build.pl --installdirs site' returned status 512

this not fix per se take at:


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