r - checkCompilerOptions Error while installing package (littler/Docker) -


on last line, this docker file calls littler::install.r install rcpp rcppeigen , matrixstats.

the whole code working charm couple of months back. now, bombs @ last step. more precisely, rcpp , rcppeigen still install perfectly, when comes installing matrixstats, get:

installing /usr/local/lib/r/site-library/matrixstats/libs ** r ** inst ** byte-compile , prepare package lazy loading ** *** installing indices ** building package indices ** installing vignettes ** testing if installed package can loaded error in get(name, envir = asnamespace(pkg), inherits = false) :    object 'checkcompileroptions' not found calls: ::: -> execution halted error: loading failed * removing ‘/usr/local/lib/r/site-library/matrixstats’  downloaded source packages in     ‘/tmp/downloaded_packages’ warning message: in install.packages(f, lib, if (ismatchingfile(f)) null else repos) :   installation of package ‘matrixstats’ had non-zero exit status

it's error never had before , have trouble locating coming from. causing problem? info lot.

from top of head i'd blame change in matrixstats [ see below , appears blameless ] -- familiar other moving parts , not aware of changes or bugs.

one thing fishy though trailing line break:

run install.r rcpp rcppeigen  matrixstats \

you may try without it.

edit: , worth fired our standard base layer docker image r-base via

docker run --rm -ti r-base /bin/bash

and invoked 

install.r rcpp rcppeigen matrixstats

which executed fine.

so if sonething wrong other docker container may have take author , work through changes relative our dockerfile seems have used base.


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